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nmrglue provides you with a Python based module that you can use to process, analyze and view NMR data.
nmrglue supports multiple NMR file formats, such as NMRPipe, Agilent/Varian, Rowland NMR Toolkit, Sparky SIMPSON, and Bruker. It can read, write and convert any of these file formats in Python.

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nmrglue provides data-processing utilities for NMR spectroscopy and magnetic resonance, and enables you to perform tasks such as peak picking, deconvolution, fingerprinting, and chromatogram alignment. nmrglue is a Python module which can be integrated into NMR pipelines with a few lines of code. This library is based on the nmrpipe library, and shares its code base.

Features:

Supports reading data from the following NMR formats:
NMRPipe
Agilent/Varian
Rowland NMR Toolkit
Sparky
Simpson
Bruker

Supports reading data from the following NMR containers:
Jmol
MolProbity
NMRViewJ

Supports writing data to the following NMR formats:
NMRPipe
Agilent/Varian
Rowland NMR Toolkit
Sparky
Simpson
Bruker

Supports reading and writing NMR data files in Python
Uses APIs for common NMR data types
Ability to provide bash, Python, or C callable functions to read/write data

License: GPL v3 (or later)
Documentation:
Source code:
Installation:
pip install nmrglue

Spectro does allow for loading of raw data.

I recommend using Open Source spectroscopy packages as the first level of processing on your raw data.

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(import module1)
(def f (f))

If I now require module2.clj, then the def f gets replaced with the function in module2, and I cannot reach that function from the code in module1 anymore.
Is there a way to make import module2 load its functions as well

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nmrglue is a Python library for accessing NMR spectra and spectroscopy data. It also provides plugins for NMRPipe, VarianNMR, Agilent NMR, Sparky, and the Bruker NMR Diagrammer.
It can also load and work with files in NMRPipe, VarianNMR, Agilent NMR, Rowland NMR Toolkit, Sparky, and Bruker formats, including the newer NMRPipe format, which contains many more features.
It is open source (LGPL license), and can be installed from pip.
In addition to providing support for various types of NMR and spectroscopy data, nmrglue also provides support for parsing data into tab-delimited table formats such as the sdf, ISIS, and Sparky DB formats. The function „parse_sdf()“ and „parse_file()“ are used for parsing.

The NMRFusion library is a Python module for reading and writing NMR spectra from a variety of widely used NMR software packages. It supports the following:

NMRPipe format (aka AF2PIPE and CPMG format)
NMRViewer (version 1.0.1) format
2D Plotter (version 0.6.4) format
DFT Bruker format

Currently, there is no NMRFusion module available for Python 2.7 so you will need to install it via pip, e.g.
pip install NMRFusion

Differential activity of human neutrophils on Trypanosoma cruzi, Trichomonas vaginalis, and Leishmania amazonensis.
The activities of human peripheral blood neutrophils on trypomastigote forms of Trypanosoma cruzi and Trichomonas vaginalis and metacyclic Leishmania amazonensis promastigotes were evaluated. Neutrophils showed selective activities in killing of trypomastigotes of T. cruzi and T. vaginalis and no killing of L. amazonensis. The killing of amastigotes of L. amazonensis and T. vaginalis by human neutrophils was also evaluated. The killing of amastigotes of T. vaginalis by human neutrophils was dependent on the ratio of: neutrophils to
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+ Extended NMRPipe-like wrapper for the NMRPipe toolkit
+ Agilent/Varian, OpenBabel/Krystal, SparkySIMPSON, ChemicalShifts and CNS workflows for proton, carbon and nitrogen
+ Allows output of NMRPipe files with standardized NMRPipe keywords and spectroscopy data, such as chemical shifts and coupling constants
+ Can read, write and convert any NMRPipe files
+ Does not require any additional Python package
+ Can read and write ADAM, mzXML, eXtensible Markup Language (XML), maXML or mzData format
+ Can write any of these files
+ Allows for multiple molecule analysis with easily executable workflows
+ Supports most common NMRPipe workflow tasks
+ Can include or exclude headers from files
+ Can output to numpy, cPickle, JSON and CSV formats
+ Can be run from Python 2.x and 3.x.
+ Project page:
+ Download:
+ Changes:
+ This project is part of the Rigel package.

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What’s New In Nmrglue?

nmrglue is based on package ’numpy‘, and provides a tight integration with Python. It is an open source package and free software under GNU public license.

What is new in nmrglue 0.7.6?
—————————

0.7.6 is the first release of nmrglue 0.8.0. The release has been a long time coming. But, it’s finally here.

————————
Changes since 0.7.5.1
————————

0.7.6
* Support installation for Python 2.7.9 and 3.6
* Support for (de)merging multiple 2D/3D spectra from a single file
* Support for creating, reading and writing to PARIS
* Fixes for columns needing quotes when exporting, which were causing issues when reading files produced by NMRPipe (Now uses the ‚features‘ option)
* A much better error handling for the many file format errors that may be thrown up by file conversion (The previous release would spit out garbage at you if a file couldn’t be converted).
* Fixed a bug in the way several new format specific exceptions are handled
* A lot of performance improvements for reading, writing and converting files
* Several other minor bug fixes and features

0.7.5.1
* Fixed an issue where NMRPeakHandler correctly detected axes that shouldn’t be there.
* Make sure to set the correct axis before doing any operations on your data.
* Re-added import of pylab so that visualization can be performed

0.7.5
* Fixed an error that would occasionally occur when importing data.
* Added python wrapper to convert/export more file formats (NMRPipe and more)
* Fixed a problem when exported data is based on multiple different file formats (Wasn’t reading the *same* data formats).
* Fixed a bug when written to file, column names should now be escaped properly.
* Fixed an issue when reading data with sub files of the same type (The NMRPeakHandler was automatically converting the second file in to NMR data).

0.7.4
* Fixed a problem that was not writing the correct value to the.txt files.
* Improved handling of NMR file types from.DAT to.ncc
* Fixed a bug that was occuring when writing to multiple t

System Requirements:

Processor: Intel Core 2 Duo E8400 @ 3.20GHz or equivalent
Memory: 4 GB RAM
Graphics: Intel HD 4000 or NVIDIA GeForce GTS 450
Hard Drive: 40 GB free space
Sound Card: DirectX Compatible Sound Card
Additional Notes: Windows 8 compatible (requires the free download of Windows 8.1)
Minimum Hardware Requirements
Runtime: 5.02 GB
Language: English
What’s New in This Release:
– Content-lite user interface mode to lower installation and memory usage.

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